Resurgo Genetics's repositories
TNML
Tensor network machine learning. Based on the paper "Supervised Learning with Quantum Inspired Tensor Networks" http://arxiv.org/abs/1605.05775
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
the-incredible-pytorch
The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.
deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
GaKCo-SVM
GaKCo: a Fast Gapped k-mer string Kernel using Counting
Awesome-pytorch-list
A comprehensive list of pytorch related content on github,such as different models,implementations,helper libraries,tutorials etc.
pufferfish
An efficient index for the colored, compacted, de Bruijn graph
training_camp
Genetics training camp
DeepChrome
DeepChrome: Deep-learning for predicting gene expression from histone modifications
BluePyOpt
Blue Brain Python Optimisation Library
efficient_densenet_pytorch
A memory-efficient implementation of DenseNets
c-blosc2
New generation c-blosc with a new API and a new container (both memory and disk). Still preliminary.
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
DeepLearningForNLPInPytorch
An IPython Notebook tutorial on deep learning for natural language processing, including structure prediction.
chipseq_pipeline
AQUAS TF and histone ChIP-seq pipeline
SpatialDE
Test genes for Spatial Variation
atacflow
Analysis pipeline for ATACseq data using Nextflow
tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
bracer
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
PyRoaringBitMap
A Python wrapper over the C implementation of roaring bitmap.
roaringbitmap
Roaring Bitmap in Cython
python-machine-learning-book-2nd-edition
The "Python Machine Learning (2nd edition)" book code repository and info resource
DeepLearning-in-Bioinformatics
For anyone who are eager to applying deep learning in bioinformatics!
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
feather
Feather: fast, interoperable binary data frame storage for Python, R, and more powered by Apache Arrow