Resurgo Genetics's repositories
containers
Bioinformatics containers
arvados_trial
Pilot test for using the Arvados system to create new MGI cancer pipelines.
argparse2tool
transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
boruta_py
Python implementations of the Boruta all-relevant feature selection method.
cactus
Genome aligner based upon notion of Cactus graphs
common-workflow-language
Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
composer
Visual and code editor for Common Workflow Language
cwl
Common Workflow Language tools and workflows by Pitagora-Network
cwltest
Framework for testing CWL tools and workflows
GGR-cwl
CWL tools and workflows for GGR
GrapHi-C
GrapHi-C: graph-based visualization of Hi-C data
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
imagehash
A Python Perceptual Image Hashing Module
language-cwl
atom plugin for cwl
Leaflet
:leaves: JavaScript library for mobile-friendly interactive maps
mothur
Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
pipelines-cwl
Pipelines developed and used by 4DN-DCIC in Common Workflow Language
python-cwlgen
Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
pytudes
Python programs to practice or demonstrate skills.
racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116
redis-py
Redis Python Client
sambamba
Tools for working with SAM/BAM/CRAM data
sonLib
Small general purpose library for C and Python with focus on bioinformatics.
test_bcbio_cwl
Test workflows, run scripts and data for bcbio Common Workflow Language integration
uTensor
AI inference library based on mbed and TensorFlow