marcin p. joachimiak's repositories
ontoENDURABLE
ontological annotations for products from the ENDURABLE project
MAK
Massive Associative K-biclustering
semantic-sql
SQL and SQLite builds of OWL ontologies
model-card-schema
Experimental linkml rendering of model cards
MAK_projects
A repository for input data, MAK results, and related analysis.
w3id.org
Website source code for w3id.org.
units-of-measurement-server
A small Flask server to demonstrate UCUM code to linked data conversion
sample-annotator
NMDC Sample Annotator
berkeleybop.github.io
Homepages for the Berkeley BOP.
biosample-analysis
analysis of biosamples in INSDC
ensmallen_graph
Rust library to run weighted random walks on very big graphs.
kg-covid-19
KG hub for COVID-19 and related emerging viruses
sample_service_validator_config
Stores the sample service metadata validation configuration file.
embiggen_experiments
Repository containing experiments executed on Embiggen/Ensmallen
kg-covid-19-data
data requiring UI interaction to download, fairly static, small files -- supporting kg-covid-19
embiggen
Embedding generator - embiggen
metadata_converter
Conversion of schemas/templates/metadata to biolinkml
mat2vec
Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).
translator-testing-framework
A testing framework for Translator using tests written in Behave