marcin p. joachimiak (realmarcin)

realmarcin

Geek Repo

Company:Lawrence Berkeley National Laboratory

Twitter:@realmarcin

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marcin p. joachimiak's repositories

biosample-analysis

analysis of biosamples in INSDC

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ontoENDURABLE

ontological annotations for products from the ENDURABLE project

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berkeleybop.github.io

Homepages for the Berkeley BOP.

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ensmallen_graph

Rust library to run weighted random walks on very big graphs.

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MAK

Massive Associative K-biclustering

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embiggen

Embedding generator - embiggen

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embiggen_experiments

Repository containing experiments executed on Embiggen/Ensmallen

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kg-covid-19

KG hub for COVID-19 and related emerging viruses

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kg-covid-19-data

data requiring UI interaction to download, fairly static, small files -- supporting kg-covid-19

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MAK_projects

A repository for input data, MAK results, and related analysis.

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mat2vec

Supplementary Materials for Tshitoyan et al. "Unsupervised word embeddings capture latent knowledge from materials science literature", Nature (2019).

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metadata_converter

Conversion of schemas/templates/metadata to biolinkml

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model-card-schema

Experimental linkml rendering of model cards

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sample-annotator

NMDC Sample Annotator

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sample_service_validator_config

Stores the sample service metadata validation configuration file.

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semantic-sql

SQL and SQLite builds of OWL ontologies

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translator-testing-framework

A testing framework for Translator using tests written in Behave

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units-of-measurement-server

A small Flask server to demonstrate UCUM code to linked data conversion

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w3id.org

Website source code for w3id.org.

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