Hongyu Xie's repositories
pymc
Bayesian Modeling and Probabilistic Programming in Python
dl-workshop
Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!
scvi-tools
Deep probabilistic analysis of single-cell omics data
PGMax
Loopy belief propagation for factor graphs on discrete variables in JAX
berkeleydeeprlcource-homework
Assignments for CS294-112.
sr2-solutions
Solutions to exercises and homework for the second edition of Statistical Rethinking
test
practicing
numpy-ml
Machine learning, in numpy
BayesModa
pymc3 model for combining expert rater judgments from the MODA sleep spindle dataset.
rtg-tools
RTG Tools: Utilities for accurate VCF comparison and manipulation
mojombo.github.io
Jekyll source for my personal blog.
bpadictionary
Data dictionary for the Blood PAC Commons
jmcglone.github.io
Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
cython
A Python to C compiler
scikit-learn
scikit-learn: machine learning in Python
Coding-Guide
自己随手记录的东西
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
MrBam
Query Mutated Reads from a Bam
resume
My CV/resume in LaTeX.
MutScan
Detect important mutations by scanning FastQ files directly
awesome-bio-datasets
awesome-bio-datasets
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
OpenGene.jl
OpenGene, core libraries for NGS data analysis and bioinformatics in julia
homebrew-core
:beers: Core formulae for the Homebrew package manager