Hongyu Xie's repositories
bpadictionary
Data dictionary for the Blood PAC Commons
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
awesome-bio-datasets
awesome-bio-datasets
BayesModa
pymc3 model for combining expert rater judgments from the MODA sleep spindle dataset.
berkeleydeeprlcource-homework
Assignments for CS294-112.
Coding-Guide
自己随手记录的东西
cython
A Python to C compiler
dl-workshop
Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
homebrew-core
:beers: Core formulae for the Homebrew package manager
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
jmcglone.github.io
Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.
mojombo.github.io
Jekyll source for my personal blog.
MrBam
Query Mutated Reads from a Bam
MutScan
Detect important mutations by scanning FastQ files directly
numpy-ml
Machine learning, in numpy
OpenGene.jl
OpenGene, core libraries for NGS data analysis and bioinformatics in julia
PGMax
Loopy belief propagation for factor graphs on discrete variables in JAX
pymc
Bayesian Modeling and Probabilistic Programming in Python
resume
My CV/resume in LaTeX.
rtg-tools
RTG Tools: Utilities for accurate VCF comparison and manipulation
scikit-learn
scikit-learn: machine learning in Python
scvi-tools
Deep probabilistic analysis of single-cell omics data
sr2-solutions
Solutions to exercises and homework for the second edition of Statistical Rethinking
test
practicing