Hongyu Xie's repositories

pymc

Bayesian Modeling and Probabilistic Programming in Python

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dl-workshop

Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!

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scvi-tools

Deep probabilistic analysis of single-cell omics data

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PGMax

Loopy belief propagation for factor graphs on discrete variables in JAX

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berkeleydeeprlcource-homework

Assignments for CS294-112.

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sr2-solutions

Solutions to exercises and homework for the second edition of Statistical Rethinking

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test

practicing

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numpy-ml

Machine learning, in numpy

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BayesModa

pymc3 model for combining expert rater judgments from the MODA sleep spindle dataset.

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rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

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mojombo.github.io

Jekyll source for my personal blog.

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bpadictionary

Data dictionary for the Blood PAC Commons

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jmcglone.github.io

Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.

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handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

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cython

A Python to C compiler

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scikit-learn

scikit-learn: machine learning in Python

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Coding-Guide

自己随手记录的东西

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AfterQC

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

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MrBam

Query Mutated Reads from a Bam

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resume

My CV/resume in LaTeX.

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MutScan

Detect important mutations by scanning FastQ files directly

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awesome-bio-datasets

awesome-bio-datasets

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hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

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OpenGene.jl

OpenGene, core libraries for NGS data analysis and bioinformatics in julia

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homebrew-core

:beers: Core formulae for the Homebrew package manager

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