Reactome's repositories
Pathway-Exchange
Pathway Exchange Code Repository
release-download-directory
Data-release-pipeline: Generation of files for the Reactome website download directory
release-biomodels
Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances
reactome_chatbot
This is Reactomes chatbot to its database and search index
data-release-pipeline
The next generation of the Reactome data release pipeline.
release-orthoinference
Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species
release-orthopairs
Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)
CuratorTool
The Reactome Java API for the relational database and the Curator Tool
release-update-stable-ids
Data-release-pipeline: Updates stable identifiers of manually curated instances
curation-query
Projects for custom queries to the Reactome curation database
interaction-importer
This is for importing Intact data into the neo4j database
release-go-update
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)
release-chebi-update
Data-release-pipeline: Synchronization of gk_central Reference Molecule instances with ChEBI (https://www.ebi.ac.uk/chebi/)
release-cosmic-update
Code for updating COSMIC identifiers.
gsa-backend
Backend code of the Kubernetes based ReactomeGSA Analysis System
release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
content-service
The new Reactome REST API to access the data
analysis-service
A RESTful API to access pathway analysis tools
analysis-core
Pathway enrichment and expression analysis as well as species comparison tool