Metaproject for RDP Tools This project includes the modules from the RDP (Classifier, Clustering, SequenceMatch, ProbeMatch, InitialProcessing, FrameBot, ReadSeq, Xander) and all their dependencies. Don't click "Download ZIP" button, instead, copy the cloneURL and type git clone cloneURL After cloning this repository enter the commands ## Initial Project Set Up $ git submodule init $ git submodule update then type 'make' Jars are placed in the main directory, you can run them with java -jar classifier.jar|Clustering.jar|... Building depends on 'make' and 'ant 1.9'. ## Update Existing Project $ git pull $ git submodule update $ make clean $ make ## Usage The RDP Paired-end Reads Assembler used in the publication (Cole et al., 2014 Nucl. Acids Res.) is available at http://rdp.cme.msu.edu/misc/resources.jsp See each individual tool page or fungene_pipeline (https://github.com/rdpstaff/fungene_pipeline) to run one or multiple tools.