Quinn Research Group's repositories
ornet-scipy2024
Repository for "Identifying virulence determinants in pathogenic mycobacteria via host cell mitochondrial morphology" in SciPy 2024
quinngroup.github.io
Group landing page.
sscs-scipy2023
SciPy 2023 paper repo for Self-Supervised Cilia Segmentation
scipy_proceedings
Tools used to generate the SciPy conference proceedings
ornet-reu-2021
OrNet REU summer 2021.
representation-notes
A repo dedicated to notes/tutorials/papers regarding basic ML/DL and representation theory.
academic-honesty
Website for the Academic Honesty podcast.
CiliaRepresentation
A modular generative pipeline for understanding cilia appearance and dynamics
3Dcell_tracking_DSAA2019
This repository contains the codes for the paper we submitted to IEEE DSAA 2019 : "Lightweight and Scalable Particle Tracking and Motion Clustering of 3D Cell Trajectories"
ciliaweb-dashboard
Dashboard for the CiliaWeb representation learning module.
dr1dl-Dask
Dictionary Learning in Dask
cilia-metrics
Scripts for computing metrics from ciliary motion.
Generative-Models
Generative Models
openscience-intro-oct2019
Introduction to Open Science guest lecture for Dr. Ron Walcott.
SciPy2019-demo
Demo for Scipy 2019
qrg-talks
Materials and references for all QRG meetings.
zebrafish_epilepsy_repository
Data analysis of calcium imaging on models for epilepsy. Primarily with Python.
openscience-intro-march2019
Introduction to Open Science guest lectures for Dr. Suzanne Barbour.
fergus-ssl
Python implementation of the Rob Fergus semi-supervised learning algorithm.
quarks
scripts and files related to posts to The Quarks' Medium blog
addf_pomdp
Toy implementation of the POMDP framework defined in the ADDF grant and technical report.
toxoplasma-3DTracking
This repository is created for opensourcing the codes for OSBD workshop paper on IEEE Bigdata 2018
open-science-2018
Materials for Open Science guest lecture with Dr. Nicole Lazar.
ornet-reu-2018
OrNet work part of summer 2018 REU.