pyc1216's repositories
hlaloh-pipeline
hla-typing by optitype & polysolver , detect loh by lohhla.
scarHRD_snakemake_pipeline
parallel sequenza + scarHRD
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
Language:C++GPL-3.0000
faceswap
Non official project based on original /r/Deepfakes thread. Many thanks to him!
Language:PythonGPL-3.0000
FastQMixer
Simulates FASTQ data from FASTA, creates mixes
Language:PythonMIT000
gatk
Official code repository for GATK versions 4 and up
Language:JavaBSD-3-Clause000
gitignore
A collection of useful .gitignore templates
CC0-1.0000
lancet
Microassembly based somatic variant caller for NGS data
Language:CNOASSERTION000
MSI_analyse
A improvement on MSI status calculataion
VarScan2
Fix some bugs for low min-variant-freq & some MS site reported as Somatic-indel issue.
Language:Java000
go-library
Go语言入门、Go相关优质资料等分享
Language:HTMLApache-2.0000
HLAminer
⛏HLA predictions from NGS shotgun data
NOASSERTION000
NOASSERTION000
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language:PythonMIT000
tangEpiNGSInstall
Installtion for tangEpiNGSSftw
Language:Python000
vcfmgr
variant merge and hgvs_g 3'rule adjustment
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