pwwang's repositories
immunopipe
Integrative analysis for scTCR- and scRNA-seq data
pipen-args
Command line argument parser for pipen
pipen-report
Report generation system for pipen
immunopipe-AdrienneML-2020
Reanalysis of the scRNA-seq and scTCR-seq data from Luoma, Adrienne M., et al. 2020 using immunopipe.
immunopipe-example
An example of immunopipe
pipen-cli-init
A pipen CLI plugin to create a pipen project (pipeline)
pipen-board
Visualizing configuration and running of pipen pipelines on the web
pipen-cli-run
A pipen cli plugin to run a process or a pipeline
pipen-lock
Process lock for pipen to prevent multiple runs at the same time
pipen-log2file
Save running logs to file for pipen
pipen-runinfo
Generate running information for jobs in pipen pipelines.
CCPlotR
An R package for visualising cell-cell interactions
immunopipe-CheonIS-2021
Reanalysis of the scRNA-seq and scTCR-seq data from Cheon, I. S., 2021 using immunopipe.
immunopipe-EberhardtCS-2021
Reanalysis of the scRNA-seq and scTCR-seq data from Eberhardt, Christiane S., et al., 2021 using immunopipe.
immunopipe-ElhamA-2018
Reanalysis of the scRNA-seq and scTCR-seq data from Azizi, Elham, et al. 2018 using immunopipe.
immunopipe-GateD-2021
Reanalysis of the scRNA-seq and scTCR-seq data from Gate, David, et al., 2021 using immunopipe.
immunopipe-LiuB-2022
Reanalysis of the scRNA-seq and scTCR-seq data from Liu, B., et al. 2022 using immunopipe.
immunopipe-MahuronKM-2020
Reanalysis of the scRNA-seq and scTCR-seq data from Mahuron, Kelly M., et al. 2020 using immunopipe.
immunopipe-ThomasW-2020
Reanalysis of the data from Wu, Thomas D., et al. 2020 using immunopipe.
immunopipe-ZhengY-2020
Reanalysis of the scRNA-seq and scTCR-seq data from Zheng, Y., et al. 2020 using immunopipe.
mkdocs-rtd
A fork of mkdocs readthedocs theme to make it work better, especially with mkapi and mike.
pipen-cli-ref
Make reference documentation for processes
pipen-poplog
Populate logs from jobs to running log of the pipeline