Peter St. John's repositories
circadian-methods
Method files for the analysis of circadian rhythms
decay-manuscript
Latex source files for an upcoming manuscript on damping rates in circadian rhythms
levanstjohn-wedding
A website to host information on our upcoming wedding in the nerdiest way possible
productivity-maximization
Source code to produce figures for an upcoming manuscript on maximizing productivity in batch cultures
ysi-fragment-prediction
A set of codes used to perform the regressions and generate figures for the unified YSI database
ABF-Software-Seminar
Source files for the August 15th ABF software seminar on `cobrapy`
cobrapy_website
Mockup for the new cobrapy website
Collocation
A package to use casadi for collocation-based system identification
ffx
Fast Function Extraction
hyperas
Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization
hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
keras-neural-graph-fingerprint
Keras implementation of Neural Graph Fingerprints as proposed by Duvenaud et al., 2015
manuscript_feedstock
Reproducible manuscript builds to DOC and PDF via pandoc and docker
mumps-feedstock
A conda-smithy repository for mumps.
old-github-pages-site
Peter's github page
optlang
optlang - sympy based mathematical programming language
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
pandoc-docker
Docker container for Pandoc with Latex tools
pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
rmnp_data_extraction
Scripts for extracting and analyzing campsite reservations in Rocky Mountain National Park
scikit-cuda
Python interface to GPU-powered libraries
scikit-learn
scikit-learn: machine learning in Python
seaborn
Statistical data visualization using matplotlib
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
svg-crowbar
Extracts an SVG node and accompanying styles from an HTML document and allows you to download it all as an SVG file.
thesis
Latex source files for my PhD thesis
ysi_qsar_energy_fuels
Source files for doi: 10.1021/acs.energyfuels.7b00616