Example of running OMERO.server and OMERO.web in Docker.
This configuration will enable the export figure option based on: https://github.com/ome/omero-figure#enabling-figure-export (Option 2)
OMERO.server is listening on the standard OMERO ports 4063 and 4064.
OMERO.web is listening on port 4080 (http://localhost:4080/).
The default login will be user root password omero.
The initial password can be changed in docker-compose.yml.
Git clone this repository and within the cloned folder run the following commands:
docker-compose up -d
docker-compose logs -f
To make sure OMERO stores all the data on a different storage volume instead of writing to the server storage itself:
chmod ug=rwx path_to_external_storage
This will give the owner or the user read/write/executable permissions to the this folder. Change the docker-compose.yml file at this line:
volumes:
- "omero:/OMERO"
(
docker-example-omero/docker-compose.yml
Line 29 in bd71124
to:
volumes:
- "path_to_external_storage:/OMERO"
See here for more details on enabling figure export and changing location of storage ome#6
For more configuration options see: