Pradeep Rajasekhar's repositories
cellpose-colab
Google Colab notebook for Cellpose
GutAnalysisToolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
docker-example-omero
OMERO Docker compose example
smart_microscopy_minimal
Cut the cookie with Napari
BiaPy
Open source Python library for building bioimage analysis pipelines
CLIc_prototype
GPU-accelerated Image Processing library
czitools
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.
DeepLabV3Plus-PyTorch
A DeepLab V3+ Model with ResNet 50 Encoder to perform Binary Segmentation Tasks. Implemented with PyTorch.
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
imagej-updater
The automatic updater for ImageJ
imagej.github.io
The ImageJ wiki
kaggle-solutions
🏅 Collection of Kaggle Solutions and Ideas 🏅
list-of-update-sites
The update sites ImageJ knows about automatically
napari-aicsimageio
Multiple file format reading directly into napari using pure Python
npy2bdv
Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
pyclesperanto
GPU-accelerated Image Processing library using OpenCL
pyclesperanto_prototype
http://clesperanto.net
rse-aunz.github.io
https://rse-aunz.github.io/
RSEAA.github.io
Website and project management for RSEAA2023
tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile