A wrapper script for polishing a genome assembly in mutiple iterations using racon.
Requires racon and minimap2 to be installed.
The required arguments are:
- number of iteratons
- fastq file with sequencing reads that were used to assemble the genome
- fasta file with genome assembly
The polished assembly will be printed to STDOUT.
Example for two rounds of polishing:
raconnn 2 reads.fastq.gz assembly.fa > polished_assembly.fa