pmcarlton

streisand

Streisand sets up a new server running your choice of WireGuard, OpenConnect, OpenSSH, OpenVPN, Shadowsocks, sslh, Stunnel, or a Tor bridge. It also generates custom instructions for all of these services. At the end of the run you are given an HTML file with instructions that can be shared with friends, family members, and fellow activists.

macOS-Security-and-Privacy-Guide

Guide to securing and improving privacy on macOS

browsh

A fully-modern text-based browser, rendering to TTY and browsers

deepdream

marp

The site of classic Markdown presentation writer app

adarkroom

A Dark Room - A Minimalist Text Adventure

structured-text-tools

A list of command-line tools for manipulating structured text data

life

Life - a timeline of important events in my life

harlan

A language for GPU computing.

mothereff.in

Web developer tools

bioawk

BWK awk modified for biological data

scholmd

Learn how to use scholarly markdown

japanese-dev-lingo

Japanese Lingo for Developers

datacomb

An interactive tool for exploring large, tabular datasets.

pv

WebGL protein viewer

comp-genomics-class

Code and examples for JHU Computational Genomics class

getpapers

Get metadata, fulltexts or fulltext URLs of papers matching a search query

raspberrypi

Realtime Streaming with the Raspberry Pi and Plot.ly Python Library

thunderstorm

ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging

fairSIM

Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy

phypapers

How to set up a literature bot on Bluesky

taktician

An implementation of and AI for the game of Tak

kWIP

De novo estimates of genetic relatedness from next-gen sequencing data

cld

A software for the multispecies design of CRISPR/Cas9 libraries

omero-figure

An OMERO.web app for creating Figures from images in OMERO

pointcloud-loader

under construction

shell-explorer

File explorer made with shell script。

VirtualEating

Computational methods for generating CRISPR sgRNA libraries using CRISPR-EATING as described in Lane et al., 2015 (Dev. Cell).

bwa-meth

align BS-Seq reads and extract methylation without intermediate temp files

omero_importer