Peter Carlton (pmcarlton)

pmcarlton

Geek Repo

Company:Graduate School of Biostudies, Kyoto University

Location:Kyoto, Japan

Home Page:https://fediscience.org/@pmcarlton

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Peter Carlton's repositories

zotero-slack

Use Slack to get notified of new papers added to your Zotero group library, and who added them

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BibDesk2Zotero_attachments

Convert your BibDesk library to a format that can be imported *with attachments* into Zotero (translator included)

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Chromosomics

Modeling of chromosomes and the synaptonemal complex

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fvlib

fvlib is a minimalistic 3D point-spring solver library for Processing and Java, built with high-performance in mind.

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ImmortalStrand

Simulation of asymmetric strand segregation to daughter cells

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pubmed-journal-year

Makes a histogram of all articles for a given pubmed search, by journal and year

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umap-sequence-plotting

Visualization and comparison of protein and DNA sequence embeddings

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al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

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bee_variance

Exploring questions raised by bees and zero by this paper in Science: (doi)10.1126/science.aar4975

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co-partitioning

Simulations of asymmetric chromosome partitioning

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deltavisionquant

Miscellaneous quantitative routines and scripts for analyzing Deltavision images

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dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

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dodeca

Exploring 12-mer distribution in genomes

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ilas-compbio

For the ILAS Practical Computing for Biologists class

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Meio3c

Finding restriction sites that flank Snip-SNPs in C. elegans

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meiosispapers

literature-scanning robot for mastodon and twitter

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napari-zelda

ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari

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pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

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pmcarlton

Config files for my GitHub profile.

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pmcarlton.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

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shellanalysis

Routines for averaging the intensity of 3D fluorescence microscopy images in concentric shells defined by DAPI staining of nuclei

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sypsim

C simulation of SYP-1 phosphorylation

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