Peter Carlton's repositories
zotero-slack
Use Slack to get notified of new papers added to your Zotero group library, and who added them
BibDesk2Zotero_attachments
Convert your BibDesk library to a format that can be imported *with attachments* into Zotero (translator included)
Chromosomics
Modeling of chromosomes and the synaptonemal complex
ImmortalStrand
Simulation of asymmetric strand segregation to daughter cells
pubmed-journal-year
Makes a histogram of all articles for a given pubmed search, by journal and year
umap-sequence-plotting
Visualization and comparison of protein and DNA sequence embeddings
al-folio
A beautiful, simple, clean, and responsive Jekyll theme for academics
bee_variance
Exploring questions raised by bees and zero by this paper in Science: (doi)10.1126/science.aar4975
co-partitioning
Simulations of asymmetric chromosome partitioning
deltavisionquant
Miscellaneous quantitative routines and scripts for analyzing Deltavision images
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
ilas-compbio
For the ILAS Practical Computing for Biologists class
meiosispapers
literature-scanning robot for mastodon and twitter
napari-zelda
ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
pmcarlton
Config files for my GitHub profile.
pmcarlton.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
shellanalysis
Routines for averaging the intensity of 3D fluorescence microscopy images in concentric shells defined by DAPI staining of nuclei