Giters
lh3
/
bioawk
BWK awk modified for biological data
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Stargazers:
590
Watchers:
36
Issues:
35
Forks:
120
lh3/bioawk Issues
VCF header causes NR mismatch
Updated
a month ago
match with regexp does not work for me
Closed
8 months ago
Comments count
2
FR: add asorti function
Updated
8 months ago
bioawk does not stop parsing a file on `nextfile`
Updated
a year ago
Comments count
1
Segmentation fault (core dumped)
Updated
2 years ago
Comments count
1
bioawk vs awk give different results (locale-specific)
Closed
2 years ago
Comments count
6
test
Updated
2 years ago
bioawk
Closed
3 years ago
compilation fatal error - missing zlib.h
Closed
3 years ago
Comments count
2
missing license for the repo
Updated
4 years ago
Segmentation fault on empty files
Updated
5 years ago
bioawk trimming the protein sequences in the start
Updated
5 years ago
fastq comment line
Updated
5 years ago
bioawk -c fastx sets OFS=\\t with no way to change it.
Updated
5 years ago
Comments count
5
Put out new release tag since new functionality.
Updated
5 years ago
Comments count
1
Is is possible to extract the value of certain tag in sam file?
Updated
6 years ago
support multiple file of different format?
Updated
6 years ago
How to cite bioawk?
Closed
6 years ago
Comments count
1
recipe for target 'ytab.o' failed
Closed
6 years ago
Comments count
2
[notbug] unexpected termination on fasta.gz
Updated
7 years ago
Comments count
2
What is the license of bioawk?
Updated
7 years ago
ARGIND not support by bioawk?
Closed
7 years ago
Comments count
1
make fails
Closed
7 years ago
Comments count
2
help for gff format
Closed
7 years ago
Comments count
2
Hex literals are misinterpreted
Closed
8 years ago
Comments count
1
Installation issue
Closed
9 years ago
Comments count
1
Tag a stable release version
Closed
9 years ago
Comments count
8
revcomp bug?
Updated
9 years ago
Comments count
1
mv .gitigore .gitignore
Updated
9 years ago
addon.c:274:3: warning: implicit declaration of function ‘fileno’ ==> POSIX extension
Closed
11 years ago
Comments count
1
header: multiple input files causes multiple headers
Updated
11 years ago
bioawk -cfastx has a silent bug when parsing FASTA files with empty lines
Closed
11 years ago
Comments count
1
header does not respect FS flag in BEGIN
Updated
12 years ago
Comments count
1
Make array of VCF info and GFF group field.
Updated
12 years ago
Comments count
1
Manual in rst format
Updated
13 years ago
Comments count
1