pkerpedjiev

gene-citation-counts

negspy

Python NGS Repository

emptypipes

Blog / Website

bam-to-multivec

locup

nometoexecutor

nometonome

anvil-higlass-jupyter

bam-js

Parse BAM and BAM index files in javascript for node and the browser

bigtools

biopython

Official git repository for Biopython (converted from CVS)

colored_glass

colored dot plots to use with higlass

cooler

A cool place to store your Hi-C

cooltools

The tools for your .cool's

executor

hic2cool

Lightweight converter between hic and cool contact matrices.

higlass-dynseq

Dynamic sequence track for HiGlass

higlass-private

Liftoff

An accurate GFF3/GTF lift over pipeline

oakland-trees

osm2pgsql

OpenStreetMap data to PostgreSQL converter

oxbow

Read specialized NGS formats as data frames in R, Python, and more.

peax

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

peteblast-server

react-heatmap-grid

A react component for heatmap visualisation in grid layout

s3sqlite

Query SQLite files in S3 using s3fs

smart_open_chunked

Utils for streaming large files (S3, HDFS, gzip, bz2...)

t2t-lifover

tf

threads.js

🧵 Make web workers & worker threads as simple as a function call.