pipaLU

schemas

Schemas for WhyHow's automated knowledge graph creation SDK

MIMIC-III-Enriched

otter-knowledge

Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from different sources. This improves results on TDC drug target binding affinity prediction benchmarks.

RAG_on_FHIR

Work on using Retrieval-Augmented Generation (RAG) to combine Fast Healthcare Interoperable Resources (FHIR) with Generative AI.

Complete-Pytorch-with-Projects-Series-

This repository contains everything you need to become proficient in PyTorch

redis-datasets

A Curated List of Sample Redis Datasets

ChatBotDemo

An example that showcases the benefit of running AI inside Redis

the-pattern

Overall repository for NLP pipeline, API and UI, design and architecture

ccNetViz

JavaScript library for visualization of large-scale network graphs using WebGL

epigraphdb

Examples on using EpiGraphDB

limbus

LImBuS is an open source, standards compliant Biobank Information Management System developed by researchers from Aberystwyth University.

Main

Main folder. Material related to my books on synthetic data and generative AI. Also contains documents blending components from several folders, or covering topics spanning across multiple folders..

llm-course

Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.

Causal-Inference-and-Discovery-in-Python

Causal Inference and Discovery in Python by Packt Publishing

thesis

PhD thesis: "Knowledge Graph Construction from Heterogeneous Data Sources exploiting Declarative Mapping Rules"

SmartKG

This project accepts excel files as input which contains the description of a Knowledge Graph (Vertexes and Edges) and convert it into an in-memory Graph Store. This project implements APIs to search/filter/get nodes and relations from the in-memory Knowledge Graph. This project also provides a dialog management framework and enable a chatbot based on its knowledge graph.

OWL2Vec-Star

Embedding OWL ontologies

Xpresso

Predicting gene expression levels from genomic sequences

moco

PyTorch implementation of MoCo: https://arxiv.org/abs/1911.05722

aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

Awesome-DynamicGraphLearning

Awesome papers about machine learning (deep learning) on dynamic (temporal) graphs (networks / knowledge graphs).

PlotNeuralNet

Latex code for making neural networks diagrams

DeepExpression

datasets

Supplementary materials for DeepCPCFG

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

sepsis3-mimic

Evaluation of the Sepsis-3 guidelines in MIMIC-III

PythonDataScienceHandbook

Python Data Science Handbook: full text in Jupyter Notebooks

devops-course

Material for the DevOps course at the NUS FinTech Programme

MedMentions

A corpus of Biomedical papers annotated with mentions of UMLS entities.

CrowdDetection