Global Change Research Group

codEvol

Scripts for analysis of Atlantic cod genome sequences through time (Northeast Arctic and Canada)

ARMS_ClimateShift

Data, analysis, and figure production to support Pinsky, Selden, and Kitchel 2020 Annual Review of Marine Science

ClimateAndMSP

Test the benefits and costs of proactively preparing for climate change-driven species shifts.

codPolyEvol

Code for evaluating polygenic selection in Atlantic cod

mar_terr_clim

Review of marine and terrestrial biotic responses to climate

Multiple-Attractor-Inference

Data and Code for Inferring Models with Alternative Stable States from Independent Observations, by Tekwa, Krkosek, and Pinsky

networks_eco_evo

This repository contains simulated data and associated code for the manuscript 'Evolution reverses the effect of network structure on metapopulation persistence.'

PADEconnectivity

Files for investigating larval summer flounder connectivity throughout the species range from 1989-2012

speciesClimateVelocity

Code to calculate (historical) species-specific climate velocities

Approx-Bayes-Comp-Applications

biscay_range_shifts

carabid_movement

Analysis of carabid beetle movement data from Jördis Terlau

clownfish-movement

Michelle's scripts to analyse clownfish movement

coral-restoration

Coral restoration project

db_backups

Backups of our Laboratory and Leyte databases

FoodWeb

Matlab foodweb simulation in a spatial temperature gradient with temperature change over time

NePADE

Scripts for investigating Ne over time in summer flounder

PhilippinesAnemonefish2008

Data and analysis from anemonefish surveys and genotyping in the Visayas, Philippines in 2008.

Premnas-biaculeatus

Data files and analysis for the manuscript "Isolation-by-distance and isolation-by-oceanography in Maroon Anemonefish (Amphiprion biaculeatus)" (DOI: 10.1111/eva.13448) focused on estimating the larval dispersal kernels of Amphiprion biaculeatus (formerly named Premnas biaculeatus) using isolation-by-distance genetic estimates.

ProcessModel

QuantifyingWaveAttenuation

Data and scripts to accompany Pinsky et al. 2013 Ecosphere doi: 10.1890/ES13-00080.1

regional_coral_manuscript

This repository contains simulated data and associated code for the manuscript 'Evolution and connectivity influence the persistence and recovery of coral reefs under climate change in the Caribbean, Southwest Pacific, and Coral Triangle.'

shelf_habitat_distribution

How does continental shelf habitat availability change as species shift deeper and/or to higher latitudes?

ShiftTraitsPlus

Comparing species traits to observed shifts in geographic distribution. Data from Pinsky et al. 2013 plus more.

Sibling-Dispersal

sibling dispersal patterns of clark's anemone fish

species-extinction_RN

Rondi's RIOS project on species extinction

SummerFlounder_IBDsim

Simulations to understand individual-scale isolation by distance patterns in summer flounder

trawl_gains_losses

Can bottom trawl data for the US and Canada reveal environmental or species identity drivers behind regional gains and losses of marine fish and invertebrates?

trawlOccupancy

Extract occupancy data from trawlDiversity (Batt et al. 2017 ELE)

WhiteNoseSyndrome2021

White-nose syndrome study from bats along the American northeastern coast. DOI: https://doi.org/10.1111/mec.15813 . Sequences are available from the NCBI Short Read Archive (Bioproject PRJNA509256, accession nos. SAMN10574961–SAMN10575092).