pinskylab / clownfishr

R package to interact with Pinsky Lab clownfish data

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clownfishr

The goal of clownfishr is to standardize data retrieval from the Pinsky Lab Leyte database. Using these funcitons ensures that we all grab the same data in the same way.

Example

This is a basic example which shows you how to solve a common problem:

library(clownfishr)

Pull in the clownfish table data for some fish we are interested in:

fish_of_interest <- c("APCL18_201", "APCL17_355", "APCL15_115")
leyte <- read_db("Leyte")
fish <- get_fish() %>% 
  filter(sample_id %in% fish_of_interest)

Leyte BCO-DMO Data

Pinsky, M., Stuart, M. (2023) Temperature loggers (HOBO) placed in two locations off the coast of the West coast of Leyte, the Philippines , 2012-2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2023-03-06. doi:10.26008/1912/bco-dmo.862415.2

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R package to interact with Pinsky Lab clownfish data

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