philippbayer

Things-a-scientist-is-suppposed-to-know

A comprehensive and long list of things a modern scientist is supposed to know

submission_checklist

A checklist to help you avoid all those minor errors when submitting a scientific manuscript

Goodreads_visualization

A Jupyter notebook where I play with my Goodreads data

CV

My curriculum vitae.

R_gene_analysis

Linking disease resistance gene numbers with yield in soybean

dirty_data

Dirty data to teach data cleaning in R

OcOmCompareAquamaps

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

snpr

The sources of the openSNP website

Amphibolis_Posidonia_Comparison

ARC_Friend

Takes a ORCID exported bibliography and puts it into a nice format for the ROPE section of an ARC application

atlas

ATLAS - Three commands to start analyzing your metagenome data

biobeaker_testing

Testing biobeaker models!

blerg

the blerg

Brassica_oleracea_rapa_napus_code

Code for the Brassica oleracea/rapa/napus genomic comparison

chat-langchain-readthedocs

configs

Config files used to define parameters specific to compute environments at different Institutions

dotfiles

Just a couple of dotfiles so I can git clone from work, take elements as needed :)

github-issue-templates

:symbols: A collection of GitHub issue and pull request templates

learning_docker

Getting started with Docker

Minderoo_Foundation-OceanOmics-AmpliconReference

OceanOmics-amplicon

A pipeline to analyse marine fish amplicon data

OceanOmics-classifier-comparison

Comparing eDNA taxonomic classifiers

OceanOmics-ENAUploads

This keeps track of OceanOmics' ENA uploads; notably, the settings used and the returned statuses and IDs

philippbayer

resbaz2021

rockart_mca_ca

Supercharge_your_research_talk_1st_March_2023

A talk on my journey from regular biologist to data person

the_food_book_sandbox

This is a recipe book used to practice with Git, GitBook and GitHub

wrangling-pangenomes

Data Wrangling and Processing for pangenomics