AppliedBioinformatics's repositories
Brassica_oleracea_rapa_napus_code
Code for the Brassica oleracea/rapa/napus genomic comparison
BioNanoAnalyst
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
B_oleracea_R_genes_supplementary
This repository contains scripts used to generate the plots and results of the B. oleracea R-genes paper
pan_genome_scripts
Python scripts for constructing pangenomes using the iterative mapping style for the Bioinformatics Methods chapter: Making a Pan genome using the iterative mapping approach
gene-daisychain
A web server linking genome annotations. Aimed at researchers working on single genes that want to know what the homolog in other published assemblies is.
PAV_table_scripts
Python scripts for constructing PAV tables for the Bioinformatics Methods chapter: Creating a Gene Presence/Absence Table using Mosdepth.
lncRNA_Prediction_Interpretation
Notebooks, Data and Scripts for lncRNA Prediction & Interpretation
maize_early_yield_prediction
Repository with the code for predicting the yield of crop varieties using deep learning and early phenotype data.
BioNanoScripts
Scripts used for BioNano analysis