Paulo Silva's starred repositories
iOS-Wallpapers
An archive of every iOS wallpaper officially released by Apple
Specifications
GFF and GVF specification documents
genome-stratifications
Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files for use with GA4GH benchmarking tools such as hap.py to stratify true positive, false positive, and false negative variant calls based on genomic context.
biocluster
Tutorial on building a computing cluster for bioinformatics
haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
gene_lists
List of gene lists for genomic analyses.
ggd-recipes
conda recipes for genomic data
Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
gnomad_browser
gnomAD browser pre-ASHG 2018
macfusion2
Macfusion2
Detect_Homopolymer
Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).
icr142-validation
Preparation scripts and bcbio integration for the ICR142 NGS validation series
bcbio-nextgen-monitor
Monitor the status of bcbio-nextgen analyses
bcbio.prioritize
Prioritize small variants, structural variants and coverage based on biological inputs
chanjo-report
Report generator for Chanjo output