petercombs / MPRA_selection

petercombs/MPRA_selection Issues

Think more closely about what to do with bases where we have data on deletions
Updated 5 years ago
Merge Reconstructions doesn't work with snakemake on the cluster
Closed 5 years ago
Come up with a figure or three on biological results
Updated 5 years ago2
Have some method to specify target ingroup
Closed 5 years ago1
Think about comparison with ancestral reconstruction MPRAs
Closed 5 years ago1
BLAST can sometimes not return any hits in Rodents
Closed 5 years ago1
Make changes to allow software to run more easily on different computers
Updated 5 years ago1
Deal with internal node if sequence same as parent
Updated 5 years ago
Deal with LINE elements
Closed 5 years ago3
Make sure to process exonic enhancers differently
Closed 5 years ago2
Decide what to do when there's not complete saturation of the mutagenesis
Updated 5 years ago1