Peter Combs's repositories
YildizLabCode
Collection of tools for mapping and combining 2-color data
EisenLab-Code
Random collection of tools and software from my thesis work
PythonCourse-2012
Code for the QB3 Summer Python Course, run in July/August 2012
PythonCourse2011
Code for the QB3 Introduction to Python Programming Course
adventofcode2020
My Solutions for the Advent of Code Calendar
BSPoker
Calculation of probabilities for various poker hand types with non-standard decks
DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
fraser_lab
Scripts and tools commonly used in the Fraser Lab, Dept. of Biology, Stanford
leafcutter
LeafCutter: Annotation-free quantification of RNA splicing. Yang I Li, David A Knowles, Jonathan K Pritchard.
LowVolumePaper
Paper hosted on Authorea
MeDeCom
Decomposition of heterogeneous DNA methylomes
PhasedPileup
Make a display with reads from a BAM file phased to the correct parent genome
python-emd
Python wrapper around Yossi Rubner's Earth Mover's Distance implementation (http://ai.stanford.edu/~rubner/emd/default.htm)
python_bed_lookup
Use sqlite to do gene lookups from a bed file