pengouy

SpreadGL

Main development repository for SpreadGL

qiime2

Official repository for the QIIME 2 framework.

CAP2

beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

EasyMetagenome

Easy Metagenome Pipeline

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

nmed2024

AI-based differential diagnosis of dementia etiologies on multimodal data

flash

FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code

SqueezeMeta

A complete pipeline for metagenomic analysis

CRISPResso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

ViWrap

A wrapper to identify, bin, classify, and predict host-viral relationship for viruses

virome_pipeline

A general pipeline constructed for viral metagenomes analysis from NGS read data.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

GenPipes

GenPipes Read the Docs repository

rnaseq

RNA-seq, QC and differential analysis pipeline

arpir

Automatic RNA-Seq Pipelines with Interactive Report

rectg

我们从5000多个Telegram群组、频道和机器人中精心挑选了最优质的资源。本项目中的所有内容均来自互联网，仅用于学习和技术研究目的。

MegaVir

MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.

hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

iVirP

Integrative virome pipeline

VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data

pandora

PANDORA - Predictive Analytics aNd Data Oriented Research Applications :computer:

WGCNA

WGCNA_DEGs

This code provides a strategy for improved biomarker discovery from your transcriptomic data. It consists in building a co-expression network from an entire dataset, and only thereafter filtering by DEGs. This method can be applied in transcriptomic studies, regardless of biological system, species or question being considered.

GeoMapData_CN

China province/city/country geoJSON data

spread

Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.

wnv-phylogeography

Preliminary west nile virus phylogeography analysis in California

plague-phylogeography

Phylogeography of Yersinia pestis.

space-time

Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).