pd321

system-design-101

Explain complex systems using visuals and simple terms. Help you prepare for system design interviews.

what-happens-when

An attempt to answer the age old interview question "What happens when you type google.com into your browser and press enter?"

Rectangle

Move and resize windows on macOS with keyboard shortcuts and snap areas

textual

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

pytudes

Python programs, usually short, of considerable difficulty, to perfect particular skills.

inshellisense

IDE style command line auto complete

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

nextflow

A DSL for data-driven computational pipelines

drl-zh

Deep Reinforcement Learning: Zero to Hero!

awesome-certificates

Curated list of 20,000+ hours and 200+ free courses with certificates in IT, CS, Design and Business.

TUI-apps

Terminal User Interface (TUI) apps

awesome-optimization

A curated list of mathematical optimization courses, lectures, books, notes, libraries, frameworks and software.

scidataflow

Command line scientific data management tool

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

hidden-markov-model

A from-scratch Hidden Markov Model for hidden state learning from observation sequences.

atacseq_pipeline

Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

zarp

The Zavolab Automated RNA-seq Pipeline

full_stack_ChromHMM_annotations

Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes

Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

scChromHMM

🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.

quaich

snakemake pipeline for Hi-C post-processing

ngs-pipeline

Pipeline for Somatic Variant Calling with WES and WGS data

ymp

Flexible omics pipeline

genome-seek

Clinical Whole Genome and Exome Sequencing Pipeline

RetroGamingWorkshop

Retro Gaming Workshop (first offered Winter 2018)

genome_tracks

A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

RevigoCore

REVIGO (REduce + VIsualize Gene Ontology) Core library

diHMM-cpp

Improved implementation of diHMM in C++

zotero_tutorial