Beast code in Giters

Pablo Cingolani's repositories

SnpEff

Language:JavaNOASSERTION235 24 488

BigDataScript

BigDataScript: Scirpting language for big data

Language:Shell93 13 159

jFuzzyLogic

The most complete fuzzy logic library in Java. The de-facto standard for research and industrial applications.

Language:JavaLGPL-3.066 8 12

SnpSift

Language:JavaNOASSERTION33 6 71

llms_from_dummies

Language:PythonApache-2.08 30

bds

Language:JavaApache-2.06 2 2

Epistasis

Language:TeX6 4 17

umi_rx

Add RX tag to BAM file, from UMI read name

Language:Java2 30

Askat

Genome association wrapper

Language:RebolApache-2.01 20

bds_backup

bds programming language

Language:JavaApache-2.01 20

quantum_computer_simulator

Language:Jupyter Notebook1 30

server

A reference implementation of the APIs defined in the schemas repository.

Language:PythonApache-2.01 10

cnvkit

Copy number variant detection from targeted DNA sequencing

Language:PythonNOASSERTION020

CV_Pablo_Cingolani

CV Pablo Cingolani

030

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

Language:TeX020

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

Language:CMIT020

NicoJp

Programs for Nico's JP processes

Language:Python020

pcingola.github.io

Web pages

020

pysaml2

Python implementation of SAML2

Language:PythonNOASSERTION020

quantumIntro

Intro to quantum computing: qsam, qiskit, cirq, etc.

Language:Shell030

s3checksum

Calculate S3 ETag checksums

Language:Java020

schemas

Work on data models and APIs for Genomic data.

Language:PythonApache-2.0010

VarDict

Language:PerlMIT030