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Patrick Blaney (pblaney)

pblaney

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Company:NYU Langone Health

Twitter:@pblaneynyu

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Patrick Blaney's repositories

mgp1000

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

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devgru

Developmental environment for GenomicRanges utilities

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battenberg

Battenberg R package for subclonal copynumber estimation

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dryclean

Irons out wrinkles in noisy coverage data using robust PCA

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gChain

R class for representing composable syntenic mappings between coordinates of 'omes and allowing nimble lift-over of genomic features and signals through these mappings within a GenomicRanges based framework.

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Leukemia-36-2022

Repository for analysis in "Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length." from Boyle, E.M., Williams, L., Blaney, P. et al.

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mgp1000-docs

Docs for the MGP1000

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mmsig

A method for fitting a known mutational signature reference to mutational catalogues from cancer samples

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readsupport

Computes read support for arbitrary junctions and contigs for single, paired-end, and linked reads

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RSeqLib

R interface to SeqLib

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scXploringTheNiche

Single-cell eXploring the Bone Marrow Niche

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subscriptr

SLURM Scripts for BigPurple

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