pbelmann

Peter Belmann's starred repositories

pigz

A parallel implementation of gzip for modern multi-processor, multi-core machines.

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zlib

Cloudflare fork of zlib with massive performance improvements

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cobradb

COBRAdb loads genome-scale metabolic models and genome annotations into a relational database. It already powers BiGG Models, and it is available under the MIT license.

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memote

memote – the genome-scale metabolic model test suite

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tinydb

TinyDB is a lightweight document oriented database optimized for your happiness :)

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fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

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nf-tower

Nextflow Tower system

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sentinl

Kibana Alert & Report App for Elasticsearch

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dash-bio

Open-source bioinformatics components for Dash

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sd-material-ui

material-ui components for Dash

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snp-sites

Finds SNP sites from a multi-FASTA alignment file

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pyslurm

Python Interface to Slurm

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dash-rq-demo

Long running tasks in Dash using RQ

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datameta

A submission server for data and associated metadata

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metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

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edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

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alan

Alignment viewer for linux terminal

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s3fs-nio

A Java (NIO2) FileSystem Provider for Amazon AWS S3.

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parasail

Pairwise Sequence Alignment Library

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ksw2

Global alignment and alignment extension

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volcano

A Cloud Native Batch System (Project under CNCF)

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diamond

Accelerated BLAST compatible local sequence aligner.

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dash-cytoscape

Interactive network visualization in Python and Dash, powered by Cytoscape.js

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armada

A multi-cluster batch queuing system for high-throughput workloads on Kubernetes.

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cli

A simple, fast, and fun package for building command line apps in Go

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virulign

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

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ansible-role-harbor

An Ansible Role that installs Harbor.

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harbor

An open source trusted cloud native registry project that stores, signs, and scans content.

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EternalTerminal

Re-Connectable secure remote shell

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handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

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