bioboxes

rfc

Request for comments on interchangeable bioinformatics containers

bioboxes.org

The website for bioboxes

command-line-interface

Command line interface for running and verifying biobox images

bioboxes-py

Python library for creating and running bioboxes

light-assembler

LightAssembler genome assembler

biobox-minimal-base

A minimal base image with biobox software installed

bioboxes-template

Template for creating a biobox Docker image

spades

yaml2csv

camiarquikr

CommonKmers

crash-test-biobox

Docker image for testing biobox tool interfaces

cwl_biobox_assemblers

cwl_biobox_profiling

cwl_playground

cwl_profiling_evaluation

data

fast-sga

file-validator

Validate that biobox.yaml files are correct.

focus

gaet

gatb-minia

GATB minia pipeline biobox

jgi-isolate-pipeline

jgi-single-cell-pipeline

Biobox of assembly pipeline used at the JGI for single cell data

megahit

quast

ray

shovill

Genome assembler pipeline using spades and fastq preprocessors

stride

unicycler