Computational Metagenomics

Computational Metagenomics's repositories

de.NBI Nanopore Training Course

Bremges et al. (2015). GigaScience, 4:33.

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Metagenome-enabled error correction of single cell sequencing reads

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Scripts to download genomes from the NCBI FTP servers

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Miscellaneous scripts

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Edinburgh Genomics MinION training 2016

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Python module for average nucleotide identity analyses

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Pipeline for evaluation of 2d Nanopore reads

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Mesos Scheduler Implementations

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Primer schemes for real-time genome epidemiology

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Generic python workflows, optimized for parallel environments (local server and/or SGE computing cluster)

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