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Christopher Dunn (pb-cdunn)

pb-cdunn

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Company:Pacific Biosciences

Location:Menlo Park, CA

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Christopher Dunn's repositories

FALCON-examples

Examples on branches, and a useful place for testing

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FALCON_unzip

foo

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Badread

a long read simulator that can imitate many types of read problems

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DALIGNER

Find all significant local alignments between reads

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DAMASKER

Module to determine where repeats are and make soft-masks of said

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datrie

Fast, efficiently stored Trie for Python. Uses libdatrie.

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DAZZ_DB

The Dazzler Data Base

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DEXTRACTOR

Bax File Decoder and Data Compressor

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edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

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FALCON

FALCON: experimental PacBio diploid assembler

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FALCON-integrate

Build and integration- testing for FALCON

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FALCON-make

This is one way to install the FALCON packages residing in FALCON-integrate:

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falcon3

falcon in python3

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falcon_unzip3

falcon-unzip in python3

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GenomeWorks

SDK for GPU accelerated genome assembly and analysis

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gin

Gin is a HTTP web framework written in Go (Golang). It features a Martini-like API with much better performance -- up to 40 times faster. If you need smashing performance, get yourself some Gin.

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harmony

Compute error profiles from alignments

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nim-falcon

Experimental re-write of FALCON in Nim

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nim-feedstock

A conda-smithy repository for nim.

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nim-help

Need help debugging gc problem in Nim

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nimble

Package manager for the Nim programming language.

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pb-assembly

PacBio Assembly Tool Suite: Reads in ⇨ Assembly out

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plotly.py

An open-source, interactive graphing library for Python :sparkles:

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purge_dups

haplotypic duplication identification tool

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pypeFLOW

Flexible workflow engine

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pypeFLOW-1

a simple lightweight workflow engine for data analysis scripting

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pypeflow3

pypeFLOW in python3

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raptor

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snakemake

https://bitbucket.org/snakemake/snakemake/pull-requests/388/get-datrie-from-datrie-2019-package-which/diff

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toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

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