Paula Restrepo's starred repositories
singleCellTK
Interactively analyze single cell genomic data
BaysorAnalysis
Analysis for the Baysor paper
docker2singularity
A docker image for converting docker images to singularity images.
zotero-memento
Zotero extension that combats link rot by archiving webpages and journal articles.
qupath-extension-stardist
QuPath extension to run StarDist nucleus detection
qupath-extension-cellpose
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
merfish_tools
Functions and scripts for processing RNA MERFISH data
pubpeer_zotero_plugin
Plugin to show if references in Zotero have PubPeer comments
zotero-citationcounts
Zotero plugin for auto-fetching citation counts from various sources
in_situ_seq
Basic analysis pipeline for in situ sequencing
Points2Regions
Simple tool for clustering spatial points with categorical labels.