Paula Restrepo's repositories
image_feature_detection
deconvolute histology image labels for use in msccr cohort analysis
bioinfo-scripts
miscellaneous parsing scripts and plotting functions
circdb
circular RNA database & visualization
cNMF
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
exoseq
Exome Sequencing analysis pipeline for the Losic Group at Mt Sinai
gbm-case-study
Analysis for anti-PD-1 responsive GBM intratumoral heterogeneity case study
GeTalleleR
GeTallele: a method for integrative analysis and visualization of DNA and RNA allele frequencies
misc-tools
Collection of miscellaneous tools and settings to making bioinformatics easier for me to set up and do
MM-PredictionEngine
Precision Medicine Prediction Engine for the Lagana Lab Multiple Myeloma Omics Pipeline
MM-PSN
Multiple Myeloma Patient Similarity Network
spin-patient-reports
create patient reports for the DAPHNI precision medicine pipeline for multiple-myeloma
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
vim-dotfiles
vim configuration