Paula Restrepo's starred repositories
scCustomize
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
anndata2ri
Convert between AnnData and SingleCellExperiment
tidySpatialExperiment
SpatialExperiment with tidy principles
tidySingleCellExperiment
Brings SingleCellExperiment objects to the tidyverse
tidyseurat
Seurat meets tidyverse. The best of both worlds.
globus-flows-trigger-examples
Sample code for triggering Globus Flows using the Python watchdog library.
seurat-disk
Interfaces for HDF5-based Single Cell File Formats
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
seurat-wrappers
Community-provided extensions to Seurat
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data