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SCRABBLE

Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE)

SAVER

Single-cell RNA-seq Gene Expression Recovery

VIPER

scImpute

Accurate and robust imputation of scRNA-seq data

scHolography

Cottrazm

Construct Tumor Transition Zone Microenvironment

SpotClean

R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data

MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

spacexr

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

CARD

scibet

A portable and fast single cell type identifier

cellhint

A tool for semi-automatic cell type harmonization and integration

cytotrace2

CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

GEMLI

SequencingCancerFinder

seurat

R toolkit for single cell genomics

seurat-wrappers

Community-provided extensions to Seurat

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

cartoon

全是漫画，免费漫画app

STARTRAC

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

download

极光官方版本下载页 翻墙 代理 科学上网 外网 加速器 梯子 路由

MetaNeighbor

scMayoMap

CHETAH

scRNA-seq cell type identification

monocle3

SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

ROGUE

Assessing the purity of single cell population

Libra

LISI

Methods to compute Local Inverse Simpson's Index (LISI)

kBET

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.