oxpeter / library_bioinformatics_service

This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.

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We meet on Wednesdays at noon in the library commons area of the Samuel J. Wood Library, 1300 York Ave. You can see the upcoming topics in the Events section of the Library Website.

The material from each demonstration will be available in its own folder.

Feel free to post issues or comments using the github issue tracker, or (for the more adventurous), submit a pull request.

For the collection of future topics, see issue number 1.

Schedule of topics, with links to material (most recent on top)

Date Topic Presenter
2018-03-28 KEGG and Pathway analysis Peter Oxley
2018-03-21 Pandas: Joins and Plotting Peter Oxley
2018-03-14 Basic Pandas Peter Oxley
2018-03-07 Jupyterlab Peter Oxley
2018-02-28 SQL Aggregations and filtering Michael Bales
2018-02-21 Basic SQL queries Michael Bales
2017-05-29 No Demo (Holiday) Peter Oxley
2017-05-22 IntAct: A database of molecular interactions Peter Oxley
2017-05-15 Cytoscape for analysis and visualization of gene networks Peter Oxley
2017-05-08 Jupyter Notebooks Peter Oxley
2017-05-01 Gene Ontology and Gene Enrichment Analysis Peter Oxley
2017-04-24 InterPro Peter Oxley
2017-04-17 PANTHER: Protein ANalysis THrough Evolutionary Relationships Peter Oxley
2017-04-13 Bioinformatic Applications of Cytoscape (d:bug presentation) Peter Oxley
2017-04-10 DESeq2: Differential analysis of RNA-Seq data Peter Oxley
2017-04-03 KEGG: Kyoto Encyclopedia of Genes and Genomes Peter Oxley
2017-03-27 CoExpedia Peter Oxley

Useful links


Library Bioinformatics Service WCM

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This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.

License:Apache License 2.0


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