oxpeter

data_core_manager

A django app for managing infrastructure, projects and users of an institutional data core

genomepy

A set of python modules for interacting with your local genome data, ncbi, and the Tuxedo suite

unconcealed

A python package to assist visualization of image manipulation signatures

covidskills

A django app that can match people to projects, based on a common skills inventory.

htseq-transcriptome

htseq script to count reads multiply mapping to a transcriptome assembly

library_bioinformatics_service

This repository contains the workshop materials and tutorials run by the Library Bioinformatics Service at the Weill Cornell Medicine Samuel J. Wood Library.

ortholotree

Search and evaluate gene orthologs using hmm and phylogeny

python_template

a basic template that will provide useful functionality for the majority of my quick python scripts

small_fry

a miscellany of independent scripts for a multitude of (primarily) bioinformatic tasks.

2017-11-15-WCM

bioinformatics_by_jove

Demonstration of library bioinformatics and jupyter notebooks

broodswap

Time course analysis of transitions between reproductive and brood care phases in the clonal raider ant, Ooceraea biroi

dbug

notes and materials from dbug meetings

demoextension

Jupytercon extension workshop

flybase_miner

A text mining app for Drosophila genes

goncalo2019

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

jupyter_module_test

testing the setting of the jupyter mybinder envirtonment

mlanet18_twitter

A jupyter notebook showing how I created the graphics of the twitter discussion at MLA'18

mlanet19

notebooks and output of the twitter analysis for MLA '19 in Chicago

ooceraea_inotocin_expression

Gene expression analysis provided as supplementary data for Fetter et al. (2021)

oxpeter.github.io

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

semester-biology

shell-genomics

Lesson for the shell for genomics

smartfest2018

Jupyter Notebook demo for the Weill Cornell annual SMARTFest

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

transcleaner

scripts to improve or filter transcriptome assemblies

uniprot

retrieve protein sequence identifiers and metadata from http://uniprot.org

vaccination_maps

maps of vaccination rate rollout in Australia