oracle5th's starred repositories

AutoGPT

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

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hap.py

Haplotype VCF comparison tools

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bamdst

a lightweight bam file depth statistical tool

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GEKKO

GEKKO Python for Machine Learning and Dynamic Optimization

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pyomo

An object-oriented algebraic modeling language in Python for structured optimization problems.

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cyipopt

Cython interface for the interior point optimzer IPOPT

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pyipopt

A Python connector to IPOPT

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ceres_python_bindings

Python Bindings for the Ceres library using Pybind11.

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scientific-python-lectures

Tutorial material on the scientific Python ecosystem

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cpp.leastsq

A Minimal C++ Least Squares Fitting Library

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least-squares-cpp

A single header-only C++ library for least squares fitting.

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ceres-solver

A large scale non-linear optimization library

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Filtlong

quality filtering tool for long reads

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altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

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PySnooper

Never use print for debugging again

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fabric

fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

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kmeans1d

A Python package for optimal 1D k-means clustering.

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pilon

Pilon is an automated genome assembly improvement and variant detection tool

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optim

OptimLib: a lightweight C++ library of numerical optimization methods for nonlinear functions

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MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

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Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

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ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

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STAR

RNA-seq aligner

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OSCA.advanced

Advanced steps of the OSCA book

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machine-learning-notes

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习,概率模型和深度学习的讲义(2000+页)和视频链接

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pykan

Kolmogorov Arnold Networks

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YouCompleteMe

A code-completion engine for Vim

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pyconcrete

Protect your python script, encrypt it as .pye and decrypt when import it

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