oracle5th's repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
alignparse
Align sequences and then parse features.
CHM13
The complete sequence of a human genome
deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
dorado
A LibTorch Basecaller for Oxford Nanopore Reads
genomad
geNomad: Identification of mobile genetic elements
genoPlotR_wrapper
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
gggenomes
A grammar of graphics for comparative genomics
gghalves
✂️ Easy half-half geoms in ggplot2
ggvenn
Venn Diagram by ggplot2, with really easy-to-use API.
google-10000-english
This repo contains a list of the 10,000 most common English words in order of frequency, as determined by n-gram frequency analysis of the Google's Trillion Word Corpus.
kraken2
The second version of the Kraken taxonomic sequence classification system
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
NanoSim
Nanopore sequence read simulator
numpy-100
100 numpy exercises (with solutions)
PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
pepper
PEPPER-Margin-DeepVariant
Polypolish
a short-read polishing tool for long-read assemblies
poreCov
SARS-CoV-2 workflow for nanopore sequence data
PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
readfish
Read Until scripts
RiboDetector
Accurate and rapid RiboRNA sequences Detector based on deep learning
scDeepCluster
scDeepCluster for Single Cell RNA-seq data
SPMP
Singapore Platinum Metagenomes Project
the-art-of-command-line
Master the command line, in one page
trojai-fuzzing-vision
Trigger search based Trojan detection for computer vision models
Winnowmap
Long read / genome alignment software
zdict.js
汉典网站数据（汉字、拼音、释义等）