opencb / cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

opencb/cellbase Issues

Server down
Updated a year ago
Issues with cellbase URL for gnomad?
Updated a year ago
Unable to get the population frequency for variant
Updated a year ago1
Could not create index for collection genome_info: no defined index was found
Updated 2 years ago
Cellbase public endpoint?
Closed 2 years ago2
Error in CellBase 5.0 transcript endpoints
Updated 2 years ago2
Add HGMD support
Updated 3 years ago
Improve GitHub Actions CI/CD Pipeline
Updated 3 years ago
Migrate Docker images to Debian 11 and other improvements
Updated 3 years ago
Add HGNC IDs
Updated 3 years ago
RefSeq transcript flags lack MANE annotation
Updated 3 years ago
Error building genes, protein sequence not loaded correctly.
Closed 3 years ago1
Use Ensembl REST API instead of Perl API
Updated 3 years ago
Transcripts end point broken when using a replica set
Updated 3 years ago2
Add scores according to the variant effect on splicing
Updated 3 years ago
Kubernetes/Helm deployment for Cellbase
Updated 3 years ago
Clients: use script to autogenerate
Updated 4 years ago5
Java 11 - Jaxb isn't on the classpath by default
Updated 4 years ago1
Parse OBO file
Updated 4 years ago4
Add new step to publish Python package to PyPI
Closed 4 years ago3
Create a shell script to build and push Python package to PyPI
Closed 4 years ago
Copy Pyhon and R clients into build folder during installation
Closed 4 years ago
HPO annotations file missing or moved
Updated 4 years ago2
Conservation queries - duplicate code
Closed 4 years ago
Cellbase gene services wrong behavior for for some genes (we've counted 3604 in GRCh37)
Updated 5 years ago
Add a new managers layer
Updated 5 years ago1
REST API: clean up for consistency
Updated 5 years ago7
/geneid/info end point not returning expected results
Updated 5 years ago1
ClinVar: Load SCVs
Updated 5 years ago2
Add HGVS
Updated 5 years ago
Building cellbase-web
Updated 5 years ago1
Having Variation and Variant end points is confusing, we should merge them into one.
Updated 5 years ago1
Deprecated class "com.mongodb.util.JSON" in use, we should replace
Updated 5 years ago
Add github workflow to build and publish docker images in docker hub, publish to maven, and redeploy docs
Updated 5 years ago11
Verify Load
Closed 5 years ago2
Add installation option to set up sharding
Updated 5 years ago3
CellBaseR: workflow to run build check and copy to server
Updated 5 years ago5
Workflow: add a job to post to github packages
Updated 5 years ago1
GRCH38 data files
Updated 5 years ago
PyCellBase: add Pylint (or similar), add this check to workflow
Updated 5 years ago1
Create a shell script to build and push Docker images on DockerHub
Updated 5 years ago2
Add option in Maven to publish docker images
Closed 5 years ago1
hsapiens is a shortname, id, and species in the data model. Could we merge?
Updated 5 years ago
API error: meta/status and meta/about generating stacktrace
Closed 5 years ago3
Add docker to start REST server
Closed 5 years ago2
meta/status only shows tomcat status, add REST too
Updated 5 years ago
REST error: gene Count is empty
Closed 5 years ago1
REST server not returning results
Closed 5 years ago5
Error on Load
Closed 5 years ago1
Remove Ensembl VCF
Updated 5 years ago