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:clipboard: Overview on Projects around openPMD

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Projects using openPMD

The following list of projects use the openPMD standard to describe their data. For additional information, we list third-party projects marked with a (third party) to acknowledge the the work provided in those for our format handling.

Documents

Scientific Simulations

  • PIConGPU (HZDR, Germany)

    • domain: electro-dynamic particle-in-cell code
    • repository (GPLv3+/LGPLv3+)
    • maintainers: A Huebl @ax3l, M Bussmann @bussmann et al.
    • status: implemented (base standard + ED-PIC)

  • Warp (LBNL & LLNL, United States)

    • domain: electro-dynamic/static particle-in-cell code
    • repository (BSD-3-Clause-LBNL)
    • maintainers: JL Vay @jlvay, D Grote @dpgrote, R Lehe @RemiLehe et al.
    • status: implemented (base standard + ED-PIC)

  • WarpX (LBNL & LLNL, United States)

    • domain: electro-dynamic/static particle-in-cell code
    • repository (BSD-3-Clause-LBNL)
    • maintainers: JL Vay @jlvay, D Grote @dpgrote, R Lehe @RemiLehe, M Thevenet @MaxThevenet, A Huebl @ax3l et al.
    • status: implemented (base standard + ED-PIC)

  • FBPIC (LBNL, CFEL Hamburg University)

    • domain: electro-dynamic particle-in-cell code with spetral solver and Fourier-Bessel decomposition in cylindrical geometry
    • repository (BSD-3-Clause-LBNL)
    • maintainers: R Lehe @RemiLehe, M Kirchen @MKirchen et al.
    • status: implemented (base standard + ED-PIC)

  • Wake-T (DESY, Germany)

    • domain: fast particle-tracking code for plasma-based accelerators
    • repository (GPLv3+)
    • maintainers: A Ferran Pousa @AngelFP
    • status: implemented (base standard)

  • SimEx Platform (EUCALL, European XFEL)

    • domain: software platform for simulation of advanced photon experiments
    • repository (GPLv3+)
    • maintainer: C Fortmann-Grote @CFGrote
    • status: implemented (base standard)

  • LUME (SLAC, USA)

  • ParaTAXIS (HZDR, Germany)

    • domain: parallel tracer for arbitrary X-ray interaction and scattering
    • repository (GPLv3+)
    • maintainers: M Bussmann @bussmann et al.
    • original author: A Grund @Flamefire
    • status: implemented (base standard for X-ray laser & density profiles)

  • OSIRIS (UCLA, USA and IST, Portugal)

    • domain: electro-dynamic particle-in-cell code
    • repository: closed, available through MoU
    • maintainers: OSIRIS Consortium (UCLA/IST)
    • original author: R G Hemker (UCLA)
    • an openPMD fork for OSIRIS 4.0 is available from UCLA; existing grid data can be converted from the previous OSIRIS file format to openPMD format by using the python library https://github.com/UCLA-Plasma-Simulation-Group/pyVisOS

  • UPIC-Emma (UCLA, USA)

    • domain: 2-1/2D electromagnetic particle-in-cell code
    • repository (UCLA-NC)
    • maintainer: F Tsung @tsung1029
    • original author: V Decyk
    • status: implemented

  • Sirepo/Warp PBA (RadiaSoft, USA)

    • domain: 2-1/2D r-z electromagnetic PIC for beam-plasma and laser-plasma
    • repository
    • free use
    • maintainers: P Moeller @moellep, R Nagler @robnagler, D Bruhwiler @bruhwiler
    • original UI authors: P Moeller @moellep, R Nagler @robnagler
    • original code authors: JL Vay @jlvay, D Grote @dpgrote
    • status: implemented

  • Sirepo/Warp VND (RadiaSoft, USA)

    • domain: 2D and 3D Cartesian electrostatic PIC with complex boundaries and dielectrics
    • repository
    • free use
    • maintainers: P Moeller @moellep, R Nagler @robnagler, N Cook @ncook882
    • original UI authors: P Moeller @moellep, R Nagler @robnagler, N Cook @ncook882
    • original code authors: D Grote @dpgrote, JL Vay @jlvay
    • status: implemented

  • HiPACE++ (DESY, LBNL)

    • domain: 3D GPU-capable quasi-static particle-in-cell code for plasma acceleration
    • repository (BSD-3-Clause-LBNL)
    • maintainers: M Thevenet @MaxThevenet, S Diederichs @SeverinDiederichs, A Huebl @ax3l et al.
    • status: implemented

  • ACE3P (SLAC, USA)

    • domain: 3D parallel electromagnetics code suite
    • repository: closed, available through MoU
    • maintainers: Lixin Ge @lge, Cho-Kuen Ng @cho
    • original code authors: Lixin Ge @lge, Cho-Kuen Ng @cho
    • status:
      • implemented – conversion tool for EM field on unstructured grid to structured grid (David A. Bizzozero, Ji Qiang, Lixin Ge, Zenghai Li, Cho-Kuen Ng Liling Xiao, "Multi-objective optimization with an integrated electromagnetics and beam dynamics workflow", Nuclear Inst. and Methods in Physics Research, A 1020 (2021) 165844).
      • to be implemented - particles data on base standard.

  • CarpetX, a new AMR driver intended for the Einstein Toolkit

    • domain: relativistic astrophysics (black holes, neutron stars, core-collapse supernovae, and more)
    • maintainers: Roland Haas, Erik Schnetter
    • repository: https://bitbucket.org/eschnett/cactusamrex
    • status: openPMD is fully supported for reading/writing/checkpointing/recovery for 3D grids, including support for adaptive mesh refinement

  • Synergia3 (FNAL, USA)

    • domain: accelerator modeling and simulation
    • repository
    • current maintainers: Eric Stern, Marc Paterno, James Amundson, Sajid Ali
    • original code authors: James Amundson, Steve Goldhaber, Paul Lebrun, Qiming Lu, Alexandru Macridin, Leo Michelotti (CHEF libraries), Chong Shik Park, Panagiotis Spentzouris and Eric Stern
    • status: openPMD I/O is implemented for bunch I/O and statistics. Internal checkpoints still use custom HDF5 formats, but these would likely be moved to openPMD in the future.

  • MALA (Materials Learning Algorithms) (CASUS, SNL)

    • domain: ML models that replace density functional theory (DFT) calculations
    • repository: https://github.com/mala-project/mala/ (BSD 3-Clause License)
    • maintainers: Attila Cangi & Sivasankaran Rajamanickam (scientific supervision), Lenz Fiedler & Jon Vogel (code maintenance)
    • status: openPMD implemented as a feature-complete alternative to the default Numpy I/O

  • Quokka (ANU, MSU)

Data Processing and Visualization

  • openPMD-viewer (LBNL, CFEL Hamburg University)

    • domain: high level python api and interactive IPython notebook GUI
    • repository (BSD-3-Clause-LBNL)
    • maintainer: R Lehe @RemiLehe et al.
    • status: implemented

  • yt project (Members, third party)

  • VisIt (LLNL, third party)

    • domain: analysis and visualization
    • repository (BSD-3-Clause)
    • plugin repository (BSD-3-Clause-LBNL)
    • maintainers: VisIt collaborators (LBNL: reader plugin contribution by M Lobet @xxirii, ORNL: mainlined by D Pugmire @dpugmire)
    • status:
      • 3.1.0+: implemented (HDF5 reader for base standard: 1.0.0-1.1.0)
      • note: needs renaming of .h5 files for detection to .opmd
      • future: generalize to openPMD-api reader (ADIOS, HDF5, JSON)

  • ParaView (Kitware, third party)

    • domain: analysis and visualization
    • repository (BSD-3-Clause)
    • maintainers: Kitware (reader plugin contribution by B Geveci @berkgeveci and A Huebl @ax3l)
    • status:
      • 5.9+: implemented an openPMD-api reader plugin (ADIOS, HDF5, JSON) for base standard (particles & 3D meshes)
      • 5.10+: added support for 1D and 2D meshes
      • note: needs a helper text file ending on .pmd containing a line with the openPMD-api Series filename, e.g. "data_%T.bp"

  • VisualPIC (DESY, Germany)

    • domain: high-level Python API (+GUI) for data analysis and interactive 2D/3D visualization
    • repository (GPLv3+)
    • maintainer: A Ferran Pousa @AngelFP
    • status: implemented (reads data via openPMD-viewer)

  • postpic (U Jena, Germany)

    • domain: post-processing and visualization tool for particle-in-cell data
    • repository (GPLv3+)
    • maintainer: S Kuschel @skuschel
    • status: implemented (HDF5 reader for base standard + ED-PIC)

  • PlasmaPy (Members, third party)

    • domain: plasma physics analysis
    • repository (BSD-3-Clause)
    • maintainers: Nick Murphy @namurphy, Dominik Stańczak @StanczakDominik et al. (reader implemented by Ritiek Malhotra @ritiek)
    • status:
      • 0.2.0+: implemented (HDF5 reader for base standard: 1.0.0-1.0.1)

  • APtools (DESY, Germany)

    • domain: ollection of tools for accelerator physics
    • repository (GPLv3+)
    • maintainer: A Ferran Pousa @AngelFP
    • status: implemented (read/write particle distributions following the base standard)

  • pyVisOS (UCLA, USA)

    • domain: post-processing and visualization tool for particle-in-cell data
    • repository (BSD-3-Clause)
    • maintainer: H. Wen (@Wen-Han)
    • status: implemented

  • openPMD-beamphysics (SLAC, USA)

    • domain: tools for analyzing and viewing particle accelerator data in the openPMD standard, extension beamphysics
    • repository (Apache License 2.0)
    • maintainers: C Mayes @ChristopherMayes et al.
    • status: implemented (base standard + BeamPhysics)

Note: For third-party frameworks, the general idea is to implement our readers upstream as soon as they are working.

Please check the individual repositories and feel free to contribute.

Libraries

  • openPMD-api (HZDR, Germany and LBNL, USA)

    • domain: C++ & Python API for writing & reading (BP, HDF5, JSON, ...), serial & parallel (MPI)
    • repository (LGPLv3+)
    • maintainers: F Poeschel @franzpoeschel, A Huebl @ax3l
    • status:
      • implemented: ADIOS1, ADIOS2, HDF5 and JSON for base standard (1.0.0-1.1.0)
    • supersedes our legacy C++ library:
      • libSplash (TU Dresden/HZDR, Germany)
        • domain: high-level C++ HDF5 library for mesh and particle records
        • repository (LGPLv3+)
        • maintainers: F Schmitt @f-schmitt-zih, A Huebl @ax3l
        • status:
          • 1.4.0+: full API available to fulfill the standard (read+write)

  • Fortran openPMD writer (UCLA, USA)

    • domain: Fortran 2003 HDF5 File Writers in openPMD Standard
    • repository (UCLA-NC)
    • maintainer: Weiming An @caozigao
    • status: openPMD 1.0 implemented

  • openPMD-CCD (LBNL, USA)

    • domain: A Python Module + LabView bindings for Storing CCD Images with openPMD
    • repository (BSD-3-Clause-LBNL)
    • maintainers: A Huebl @ax3l, Anthony Gonsalves @ag6520
    • status:
      • implemented: HDF5 for base standard (1.0.0-1.1.0)

  • HDF5 (third party)

    • domain: libraries for reading & writing the HDF5 format C/C++/Fortran
    • maintainer: HDF Group

  • ADIOS (ORNL, United States; third party)

    • domain: libraries for reading & writing the HDF5 format C/C++/Fortran/Java/Python
    • repository (BSD-3-Clause-DOE)
    • maintainers: N Podhorszki @pnobert, S Klasky @sklasky at al.

  • h5py (third party)

    • domain: python bindings for HDF5
    • repository
    • maintainer: A Collette @andrewcollette et al.

Tools & Converters

Please be aware that all existing tools for general file handling (HDF5, ADIOS, ...) are also usable with openPMD flavoured files!

A non-complete list of third party software for your consideration:

  • openPMD-validator (HZDR, LBNL)

    • domain: scripts and python module to validate files according to the openPMD standard
    • repository (ISC)
    • maintainers: A Huebl @ax3l, R Lehe @RemiLehe
    • status: implemented (base standard + ED-PIC)

  • openPMD-updater (HZDR, LBNL)

    • domain: scripts and python module to update openPMD files to newer versions of the openPMD standard
    • repository (ISC)
    • maintainers: A Huebl @ax3l, R Lehe @RemiLehe
    • status: currently implementing update routines for openPMD 1.0/1.1 to (upcoming) openPMD 2.0

  • openPMD-converter

    • domain: copy converters from and to openPMD, e.g. for tools/frameworks/applications without native openPMD support
    • repository
    • maintainers: various

  • openPMD-resampler (ELI-NP)

    • domain: Particle down-sampling and phase space visualization tools for post-processing in GEANT4/GPT/Wake-T etc.
    • repository
    • maintainers: A Berceanu @berceanu

  • HDF Compass (HDF Group; third party)

    • domain: viewer for HDF5 and related formats
    • repository (BSD-3-Clause-HDF)
    • development repository (our fork for ADIOS support)
    • maintainer: HDF Group (HZDR: ADIOS reader contribution by @michaelsippel)
    • status: HZDR implemented an ADIOS reader

  • HDFView (HDF Group; third party)

    • domain: viewer for HDF5
    • maintainer: HDF Group
    • download (BSD-3-Clause-HDF)

  • HDF5 command line tools (HDF Group; third party)

    • domain: HDF5 file handling
    • maintainer: HDF Group
    • examples: h5ls, h5dump, h5diff, h5repack, gif2h5, ...

  • ADIOS command line tools (ORNL, United States; third party)

    • domain: ADIOS file handling
    • maintainers: N Podhorszki @pnorbert, S Klasky @sklasky et al.
    • examples: bpls, bpdump, bpdiff, bp2bp, bp2h5, ...

  • png2gas (HZDR, Germany)

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:clipboard: Overview on Projects around openPMD

http://www.openPMD.org

collectioncommunityfileformatlibrariesopenpmdopenscience

License:Creative Commons Zero v1.0 Universal