omnideconv's repositories
immunedeconv
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
omnideconv
Unified access to several second-generation deconvolution methods
spacedeconv
A unified interface to spatial transcriptomics deconvolution tools
methylDeconv
Runs and compares different methylation based cell type deconvolution algorithms
MethylResolver
Robust method for deconvolving bulk tissue methylation data using least trimmed squares (LTS) regression
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scaden
Deep Learning based cell composition analysis with Scaden.
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