ome / ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

https://pypi.org/project/ome-zarr

ome/ome-zarr-py Issues

[test-bot] pip install --pre is failing
Updated 12 days ago2
Issue: Repeated Dask Computation When Calling `write_image` or `write_labels` with Downsampling Level > 0
Updated 18 days ago3
Read from public S3 URI without credentials
Closed 20 days ago
Using parse_url to create a store reads arrays with all zeros
Updated 21 days ago10
Download via CLI errors without --output option
Updated 22 days ago
Cannot overwrite Zarr opened with `mode= "a"`
Updated 2 months ago3
Package-level members
Closed 2 months ago2
Test suite failure for commit
Closed 2 months ago1
Reaching maximum recursion depth while loading zarr file
Closed 3 months ago9
write_image with scalar chunks only sets chunks of last axis
Closed 3 months ago
Revert A005 ignore: "module is shadowing python builtin module"
Updated 3 months ago
unable to `write_image` into a zipStore?
Updated 5 months ago
Incompatibility with Poetry?
Updated 6 months ago3
Test suite failure for commit
Closed 6 months ago1
Test suite failure for commit
Updated 6 months ago2
Reading multiscales metadata
Closed 7 months ago5
Releases on GitHub out of date
Closed 7 months ago1
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Test suite failure for commit
Closed 7 months ago
Cannot read coinsdata created according to document
Updated 8 months ago2
Readme should include how to install sphinx-rtd-theme
Closed 8 months ago
Cannot find HCS well on Windows
Closed 9 months ago2
[Reader] reading HCS file on AWS S3 results in error
Closed 9 months ago14
Sparse plate, with "missing" Wells shouldn't throw exceptions
Closed 10 months ago3
Dask arrays for HCS nodes do not `compute` to NumPy arrays
Closed 10 months ago2
Isn't `version` a `str`?
Updated 10 months ago2
`auto_mkdir` not propagated resulting in FileNotFoundError during `write_image`
Updated a year ago4
write_image fails with fsspec 2023.9.0
Closed a year ago1
Scaling issues
Updated a year ago1
Using a ZipStore instead of FSStore
Updated a year ago7
writer.write_image requires fsspec>=0.8.0
Closed a year ago1
Test suite failure for commit
Closed a year ago1
Test suite failure for commit
Closed a year ago1
Test suite failure for commit
Closed a year ago1
Test suite failure for commit
Closed a year ago2
Writing ome-zarr in a serial fashion, one 2D slice at a time
Closed a year ago4
writer function to go from large-zarr to ome-zarr (resolution levels + metadata)
Updated a year ago2
write_multiscale() writes to local path on Linux instead of cloud bucket when using dask>=2023.1.0
Updated a year ago4
Expose storage_options in parse_url
Updated a year ago1
Test suite failure for commit
Closed a year ago2
Test suite failure for commit
Closed a year ago2
Writing 384-Well Plates
Closed a year ago2
Labels not loaded from cloud buckets
Updated a year ago
reader() is not idempotent
Updated a year ago1
Scaler not scaling all dimensions
Updated a year ago1