oliviergimenez

phd-in-ecology-network

Produce the French academic network in ecology using data from these.fr

multistate_occupancy

Code to fit a multistate occupancy model with uncertainty in Jags

R2ucarehex

My attempts to create a logo for the R2ucare package

rstudio-conf-2019

Slide, code and data for "Applied Machine Learning" at Rstudio-conf 2019

data-screencasts

Code from live exploratory analyses of data in R

occ_balkanlynx

analyses for Balkan lynx paper

deming2018

Presentation for Deming Conference in December 2018

Things-a-scientist-is-suppposed-to-know

examples

Web based appendices and tutorials for code used in published articles

bycatch

Data and R code for reproducing "Protecting marine mammals, turtles, and birds by rebuilding global fisheries".

mnist-siamese-neural-network-for-R-code

mnist_siamese for R code

isec2018_tweet_analysis

Quick and dirty analyses of ISEC 2018 tweets

estim_fitness

R and Jags codes to estimate fitness using capture-recapture data

frrrenchies

Liste de ressources R utiles pour les Français

PortalData

Official Repo of the Portal Project Data

strava

Create artistic visualisations with your exercise data

starwars_network

Social network analysis of Star Wars: The Attack of the Clones

GammaGompertzCR

Fit Gamma-Gompertz model to capture-recapture data using data cloning

simul_with_jags

Illustrate how to simulate data with Jags

fillmap

Blog

This repository contains codes for all of my blog posts since March 11 2015.

occupancy_TMB

Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.

hmm_tmb

fitting multievent/hmm capture-recapture model with TMB

occupancy_in_ADMB

Illustrate how to fit dynamic occupancy model in ADMB. Benchmarking with Unmarked and JAGS.

multieventRcpp

fitting multievent capture-recapture model with Rcpp

machine-learning-cheat-sheet

Classical equations and diagrams in machine learning

ursus_Pyrenees_occupancy

Contains data and R code for paper on occupancy analyses of Brown bear habitat use in the Pyrenees

bimark

Analyse and simulate bilateral mark-recapture data with R

indhet_in_CRmodels

Illustrate CR models with individual heterogeneity (multistate, random-effect, finite-mixture)

tursiops_network_analysis

Bottlenose dolphin network analysis - GDEGeM project (in French)