olgabot

awesome-expectations

Examples of great academic lab expectations, manuals, policies for joining and being in the lab

cheatsheets

Quick lookup documents for commonly used tools

clippy-kindle

Create flashcards and markdown files from your Kindle notes/highlights.

nf-kmer-similarity

OrthoFinder

Phylogenetic orthology inference for comparative genomics

SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

2020-test-sencha

2020-workflows-paper

Strategies for leveraging workflow systems to streamline large-scale biological analyses

2021-01-27-olga-remove-protein

abSENSE

Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.968420v1)

alphafold

Open source code for AlphaFold.

awesome-nextflow

A curated list of nextflow based pipelines

bitcoin-whitepaper

Reproducing the Bitcoin Whitepaper using the Manubot

build-push-action

Build+push official Docker GitHub action

catalog

Made with Manubot catalog (please add your manuscript!!)

cerebra

high-throughput summarizing of vcf entries following a sequencing experiment

diamond_docs

DIAMOND online documentation

ensembl-compara

The Ensembl Compara Perl API and SQL schema

farm-notes

notes on the farm cluster

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

manubot

Python utilities for Manubot: Manuscripts, open and automated

misc

OrthologyOntology

Working draft of a common ontology for describing orthology resources

rootstock

Clone me to create your Manubot manuscript

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

sodar_core

Django-based framework for building scientific data management web apps.

test-empty

test-empty2

tools

Python package with helper tools for the nf-core community.

umap

Uniform Manifold Approximation and Projection