Olga Botvinnik's repositories
latex-moderncv
My latex resume using the moderncv template
nextflow-each-metadata-error
Repo to test nextflow `each` directive with metadata
psytoolkit-analysis
Analyze psytoolkit data
2022-ced9-bcl2
Structural homology between C. elegans Ced9 and human BCL2
2022-mouse-lemur-tabula-microcebus
Code for cross-species and uTAR sequence homology analyses for two Tabula Microcebus papers
2022-sourmash-multigather-kmer-stats
Do sourmash multigather, but use a background k-mer distribution model to quantify significance of matches, and report all matching k-mer sequences
2022-sourmash-multisearch
Search multiple query k-mer signatures against a database
botryllus-mhc
Code for early marine cordate, Botryllus schlosseri, and human-mouse MHC homology paper
nf-core-funcanno
Nextflow pipeline for functional annotation of protein sequences, focused on emerging model organisms without reference genomes
nf-core-sourcecred
Nextflow sourcecred
nf-functionalhomology
Identifies protein sequence pairs with functional homology, but may not have sequence homology
olgabotvinnik.com
Personal website
paperpile-notion
One-way sync Paperpile with Notion
pyo3_branchwater
Python plugin for fast search & gather
scrnaseq-for-the-99-percent
Code accompanying the paper titled, "Single-cell transcriptomics for the 99.9% of species without reference genomes" by Botvinnik et al, 2021
swan_vis
A Python library to visualize and analyze long-read transcriptomes
sync-paperpile-notion-v2
Sync paperpile to notion
sync-paperpile-to-notion
Sync paperpile library to notion
testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.